| No | Protected Area | Republic Act | Year |
| 1 | Mt. Kitanglad Range Natural Park | RA 8978 | 2000 |
| 2 | Batanes Protected Landscape & Seascape | RA 8991 | 2001 |
| 3 | Sagay Marine Reserve | RA 9106 | 2001 |
| 4 | Northern Sierra Madre Natural Park | RA 9125 | 2001 |
| 5 | Mt. Kanlaon Natural Park | RA 9154 | 2001 |
| 6 | Mt. Apo Natural Park | RA 9237 | 2004 |
| 7 | Mt. Hamiguitan Range Wildlife Sanctuary | RA 9303 | 2004 |
| 8 | Mt. Malindang Natural Park | RA 9304 | 2004 |
| 9 | Central Cebu Protected Landscape | RA 9486 | 2007 |
| 10 | Mimbilisan Protected Landscape | RA 9494 | 2007 |
| 11 | Mts. Banahaw-San Cristobal Protected Landscape | RA 9847 | 2009 |
| 12 | Bangan Hill National Park | RA 7954 | 1995 |
| 13 | Tubbataha Reefs Natural Park | RA 10067 | 2010 |
| 14 | Taklong and Tandog Group of Islands Natural Park | RA 12225 | 2025 |
| 15 | Alibijaban Protected Landscape and Seascape | RA 12226 | 2025 |
| 16 | Mt. Masaraga Protected Landscape | RA 12227 | 2025 |
